Search for expressed A. thaliana genes (PathoPlant will go offline in May 2023)   Search by locus/gene ID:       Expression parameter induction factor mean from replicates single experiments all >4 >2.5 >1.5 1.5 to -1.5 <-1.5 <-2.5 <-4 exclude genes regulated by smallRNA (highlighted in italics)     Search by stimulus:   ABA 1hr (10然) ABA 24hr (3然) ABA 24hr (30然) ABA 30min (10然) ABA 3hr (10然) ABA all Al-oversupplied roots B. cinerea 18hpi B. cinerea 48hpi B. cinerea all Brassinolide 1hr (1然) Brassinolide 30min (1然) Brassinolide 3hr (1然) Brassinolide 3hr (10nm) Brassinolide all Chitin 10min Chitin 1hr Chitin 24hr Chitin 30min Chitin 3hr Chitin 6hr Chitin all Chitooctaose Cis-jasmone Cold-stress all Cold-stressed roots 0.5hr Cold-stressed roots 12hr Cold-stressed roots 1hr Cold-stressed roots 24hr Cold-stressed roots 3hr Cold-stressed roots 6hr Cold-stressed shoots 0.5hr Cold-stressed shoots 12hr Cold-stressed shoots 1hr Cold-stressed shoots 24hr Cold-stressed shoots 3hr Cold-stressed shoots 6hr Drought-stress all Drought-stressed roots 0.25hr Drought-stressed roots 0.5hr Drought-stressed roots 12hr Drought-stressed roots 1hr Drought-stressed roots 24hr Drought-stressed roots 3hr Drought-stressed roots 6hr Drought-stressed shoots 0.25hr Drought-stressed shoots 0.5hr Drought-stressed shoots 12hr Drought-stressed shoots 1hr Drought-stressed shoots 24hr Drought-stressed shoots 3hr Drought-stressed shoots 6hr E. orontii 12hpi E. orontii 18hpi E. orontii 24hpi E. orontii 2dpi E. orontii 3dpi E. orontii 4dpi E. orontii 5dpi E. orontii 6hpi E. orontii all EF-Tu 30min EF-Tu 60min EF-Tu all Ethylene 24hr Ethylene 2hr Ethylene all F. virguliforme Flg22 (P. syringae) 1hr Flg22 (P. syringae) 4hr Flg22 (P. syringae) all GA3 1hr GA3 30min GA3 3hr GA3 all Harpin Z 1hr Harpin Z 4hr Harpin Z all Hydrogen peroxide IAA 1hr IAA 30min IAA 3hr IAA all Inflorescence vs. shoot apex, vegetative Inflorescence vs. young leaves Lipopolysaccharide 1hr Lipopolysaccharide 4hr Lipopolysaccharide all Methyl-jasmonate Methyl-jasmonate 1hr Methyl-jasmonate 30min Methyl-jasmonate 3hr Methyl-jasmonate all NPP1 (P. parasitica) 1hr NPP1 (P. parasitica) 4hr NPP1 (P. parasitica) all Osmotic-stress all Osmotic-stressed roots 0.5hr Osmotic-stressed roots 12hr Osmotic-stressed roots 1hr Osmotic-stressed roots 24hr Osmotic-stressed roots 3hr Osmotic-stressed roots 6hr Osmotic-stressed shoots 0.5hr Osmotic-stressed shoots 12hr Osmotic-stressed shoots 1hr Osmotic-stressed shoots 24hr Osmotic-stressed shoots 3hr Osmotic-stressed shoots 6hr P. infestans 12hpi P. infestans 16hpi P. infestans 24hpi P. infestans 6hpi P. infestans all P. syringae pv. maculicola 16hpi P. syringae pv. maculicola 24hpi P. syringae pv. maculicola 48hpi P. syringae pv. maculicola 4hpi P. syringae pv. maculicola 8hpi P. syringae pv. maculicola all P. syringae pv. maculicola avrRpt2- 16hpi P. syringae pv. maculicola avrRpt2- 24hpi P. syringae pv. maculicola avrRpt2- 48hpi P. syringae pv. maculicola avrRpt2- 4hpi P. syringae pv. maculicola avrRpt2- 8hpi P. syringae pv. maculicola avrRpt2- all P. syringae pv. phaseolicola 24hpi P. syringae pv. phaseolicola 2hpi P. syringae pv. phaseolicola 6hpi P. syringae pv. phaseolicola all P. syringae pv. tomato 24hpi P. syringae pv. tomato 2hpi P. syringae pv. tomato 6hpi P. syringae pv. tomato all P. syringae pv. tomato avrRpm1 24hpi P. syringae pv. tomato avrRpm1 2hpi P. syringae pv. tomato avrRpm1 6hpi P. syringae pv. tomato avrRpm1 all P. syringae pv. tomato hrcC- 24hpi P. syringae pv. tomato hrcC- 2hpi P. syringae pv. tomato hrcC- 6hpi P. syringae pv. tomato hrcC- all Pb-oversupplied (25ppm) leaves Pb-oversupplied (25ppm) roots Pb-oversupplied (50ppm) leaves Pb-oversupplied (50ppm) roots Pb-oversupplied all Powdery mildew SA analog BTH Salicylic acid Salt-stress all Salt-stressed roots 0.5hr Salt-stressed roots 12hr Salt-stressed roots 1hr Salt-stressed roots 24hr Salt-stressed roots 3hr Salt-stressed roots 6hr Salt-stressed shoots 0.5hr Salt-stressed shoots 12hr Salt-stressed shoots 1hr Salt-stressed shoots 24hr Salt-stressed shoots 3hr Salt-stressed shoots 6hr TMV all TMV infected leaves 3dpi TMV infected leaves 4dpi TMV systemic leaves 14dpi X. campestris Zeatin 1hr (1然) Zeatin 30min (1然) Zeatin 3hr (1然) Zeatin 3hr (20然) Zeatin all ABA 1hr (10然) ABA 24hr (3然) ABA 24hr (30然) ABA 30min (10然) ABA 3hr (10然) ABA all Al-oversupplied roots B. cinerea 18hpi B. cinerea 48hpi B. cinerea all Brassinolide 1hr (1然) Brassinolide 30min (1然) Brassinolide 3hr (1然) Brassinolide 3hr (10nm) Brassinolide all Chitin 10min Chitin 1hr Chitin 24hr Chitin 30min Chitin 3hr Chitin 6hr Chitin all Chitooctaose Cis-jasmone Cold-stress all Cold-stressed roots 0.5hr Cold-stressed roots 12hr Cold-stressed roots 1hr Cold-stressed roots 24hr Cold-stressed roots 3hr Cold-stressed roots 6hr Cold-stressed shoots 0.5hr Cold-stressed shoots 12hr Cold-stressed shoots 1hr Cold-stressed shoots 24hr Cold-stressed shoots 3hr Cold-stressed shoots 6hr Drought-stress all Drought-stressed roots 0.25hr Drought-stressed roots 0.5hr Drought-stressed roots 12hr Drought-stressed roots 1hr Drought-stressed roots 24hr Drought-stressed roots 3hr Drought-stressed roots 6hr Drought-stressed shoots 0.25hr Drought-stressed shoots 0.5hr Drought-stressed shoots 12hr Drought-stressed shoots 1hr Drought-stressed shoots 24hr Drought-stressed shoots 3hr Drought-stressed shoots 6hr E. orontii 12hpi E. orontii 18hpi E. orontii 24hpi E. orontii 2dpi E. orontii 3dpi E. orontii 4dpi E. orontii 5dpi E. orontii 6hpi E. orontii all EF-Tu 30min EF-Tu 60min EF-Tu all Ethylene 24hr Ethylene 2hr Ethylene all F. virguliforme Flg22 (P. syringae) 1hr Flg22 (P. syringae) 4hr Flg22 (P. syringae) all GA3 1hr GA3 30min GA3 3hr GA3 all Harpin Z 1hr Harpin Z 4hr Harpin Z all Hydrogen peroxide IAA 1hr IAA 30min IAA 3hr IAA all Inflorescence vs. shoot apex, vegetative Inflorescence vs. young leaves Lipopolysaccharide 1hr Lipopolysaccharide 4hr Lipopolysaccharide all Methyl-jasmonate Methyl-jasmonate 1hr Methyl-jasmonate 30min Methyl-jasmonate 3hr Methyl-jasmonate all NPP1 (P. parasitica) 1hr NPP1 (P. parasitica) 4hr NPP1 (P. parasitica) all Osmotic-stress all Osmotic-stressed roots 0.5hr Osmotic-stressed roots 12hr Osmotic-stressed roots 1hr Osmotic-stressed roots 24hr Osmotic-stressed roots 3hr Osmotic-stressed roots 6hr Osmotic-stressed shoots 0.5hr Osmotic-stressed shoots 12hr Osmotic-stressed shoots 1hr Osmotic-stressed shoots 24hr Osmotic-stressed shoots 3hr Osmotic-stressed shoots 6hr P. infestans 12hpi P. infestans 16hpi P. infestans 24hpi P. infestans 6hpi P. infestans all P. syringae pv. maculicola 16hpi P. syringae pv. maculicola 24hpi P. syringae pv. maculicola 48hpi P. syringae pv. maculicola 4hpi P. syringae pv. maculicola 8hpi P. syringae pv. maculicola all P. syringae pv. maculicola avrRpt2- 16hpi P. syringae pv. maculicola avrRpt2- 24hpi P. syringae pv. maculicola avrRpt2- 48hpi P. syringae pv. maculicola avrRpt2- 4hpi P. syringae pv. maculicola avrRpt2- 8hpi P. syringae pv. maculicola avrRpt2- all P. syringae pv. phaseolicola 24hpi P. syringae pv. phaseolicola 2hpi P. syringae pv. phaseolicola 6hpi P. syringae pv. phaseolicola all P. syringae pv. tomato 24hpi P. syringae pv. tomato 2hpi P. syringae pv. tomato 6hpi P. syringae pv. tomato all P. syringae pv. tomato avrRpm1 24hpi P. syringae pv. tomato avrRpm1 2hpi P. syringae pv. tomato avrRpm1 6hpi P. syringae pv. tomato avrRpm1 all P. syringae pv. tomato hrcC- 24hpi P. syringae pv. tomato hrcC- 2hpi P. syringae pv. tomato hrcC- 6hpi P. syringae pv. tomato hrcC- all Pb-oversupplied (25ppm) leaves Pb-oversupplied (25ppm) roots Pb-oversupplied (50ppm) leaves Pb-oversupplied (50ppm) roots Pb-oversupplied all Powdery mildew SA analog BTH Salicylic acid Salt-stress all Salt-stressed roots 0.5hr Salt-stressed roots 12hr Salt-stressed roots 1hr Salt-stressed roots 24hr Salt-stressed roots 3hr Salt-stressed roots 6hr Salt-stressed shoots 0.5hr Salt-stressed shoots 12hr Salt-stressed shoots 1hr Salt-stressed shoots 24hr Salt-stressed shoots 3hr Salt-stressed shoots 6hr TMV all TMV infected leaves 3dpi TMV infected leaves 4dpi TMV systemic leaves 14dpi X. campestris Zeatin 1hr (1然) Zeatin 30min (1然) Zeatin 3hr (1然) Zeatin 3hr (20然) Zeatin all ABA 1hr (10然) ABA 24hr (3然) ABA 24hr (30然) ABA 30min (10然) ABA 3hr (10然) ABA all Al-oversupplied roots B. cinerea 18hpi B. cinerea 48hpi B. cinerea all Brassinolide 1hr (1然) Brassinolide 30min (1然) Brassinolide 3hr (1然) Brassinolide 3hr (10nm) Brassinolide all Chitin 10min Chitin 1hr Chitin 24hr Chitin 30min Chitin 3hr Chitin 6hr Chitin all Chitooctaose Cis-jasmone Cold-stress all Cold-stressed roots 0.5hr Cold-stressed roots 12hr Cold-stressed roots 1hr Cold-stressed roots 24hr Cold-stressed roots 3hr Cold-stressed roots 6hr Cold-stressed shoots 0.5hr Cold-stressed shoots 12hr Cold-stressed shoots 1hr Cold-stressed shoots 24hr Cold-stressed shoots 3hr Cold-stressed shoots 6hr Drought-stress all Drought-stressed roots 0.25hr Drought-stressed roots 0.5hr Drought-stressed roots 12hr Drought-stressed roots 1hr Drought-stressed roots 24hr Drought-stressed roots 3hr Drought-stressed roots 6hr Drought-stressed shoots 0.25hr Drought-stressed shoots 0.5hr Drought-stressed shoots 12hr Drought-stressed shoots 1hr Drought-stressed shoots 24hr Drought-stressed shoots 3hr Drought-stressed shoots 6hr E. orontii 12hpi E. orontii 18hpi E. orontii 24hpi E. orontii 2dpi E. orontii 3dpi E. orontii 4dpi E. orontii 5dpi E. orontii 6hpi E. orontii all EF-Tu 30min EF-Tu 60min EF-Tu all Ethylene 24hr Ethylene 2hr Ethylene all F. virguliforme Flg22 (P. syringae) 1hr Flg22 (P. syringae) 4hr Flg22 (P. syringae) all GA3 1hr GA3 30min GA3 3hr GA3 all Harpin Z 1hr Harpin Z 4hr Harpin Z all Hydrogen peroxide IAA 1hr IAA 30min IAA 3hr IAA all Inflorescence vs. shoot apex, vegetative Inflorescence vs. young leaves Lipopolysaccharide 1hr Lipopolysaccharide 4hr Lipopolysaccharide all Methyl-jasmonate Methyl-jasmonate 1hr Methyl-jasmonate 30min Methyl-jasmonate 3hr Methyl-jasmonate all NPP1 (P. parasitica) 1hr NPP1 (P. parasitica) 4hr NPP1 (P. parasitica) all Osmotic-stress all Osmotic-stressed roots 0.5hr Osmotic-stressed roots 12hr Osmotic-stressed roots 1hr Osmotic-stressed roots 24hr Osmotic-stressed roots 3hr Osmotic-stressed roots 6hr Osmotic-stressed shoots 0.5hr Osmotic-stressed shoots 12hr Osmotic-stressed shoots 1hr Osmotic-stressed shoots 24hr Osmotic-stressed shoots 3hr Osmotic-stressed shoots 6hr P. infestans 12hpi P. infestans 16hpi P. infestans 24hpi P. infestans 6hpi P. infestans all P. syringae pv. maculicola 16hpi P. syringae pv. maculicola 24hpi P. syringae pv. maculicola 48hpi P. syringae pv. maculicola 4hpi P. syringae pv. maculicola 8hpi P. syringae pv. maculicola all P. syringae pv. maculicola avrRpt2- 16hpi P. syringae pv. maculicola avrRpt2- 24hpi P. syringae pv. maculicola avrRpt2- 48hpi P. syringae pv. maculicola avrRpt2- 4hpi P. syringae pv. maculicola avrRpt2- 8hpi P. syringae pv. maculicola avrRpt2- all P. syringae pv. phaseolicola 24hpi P. syringae pv. phaseolicola 2hpi P. syringae pv. phaseolicola 6hpi P. syringae pv. phaseolicola all P. syringae pv. tomato 24hpi P. syringae pv. tomato 2hpi P. syringae pv. tomato 6hpi P. syringae pv. tomato all P. syringae pv. tomato avrRpm1 24hpi P. syringae pv. tomato avrRpm1 2hpi P. syringae pv. tomato avrRpm1 6hpi P. syringae pv. tomato avrRpm1 all P. syringae pv. tomato hrcC- 24hpi P. syringae pv. tomato hrcC- 2hpi P. syringae pv. tomato hrcC- 6hpi P. syringae pv. tomato hrcC- all Pb-oversupplied (25ppm) leaves Pb-oversupplied (25ppm) roots Pb-oversupplied (50ppm) leaves Pb-oversupplied (50ppm) roots Pb-oversupplied all Powdery mildew SA analog BTH Salicylic acid Salt-stress all Salt-stressed roots 0.5hr Salt-stressed roots 12hr Salt-stressed roots 1hr Salt-stressed roots 24hr Salt-stressed roots 3hr Salt-stressed roots 6hr Salt-stressed shoots 0.5hr Salt-stressed shoots 12hr Salt-stressed shoots 1hr Salt-stressed shoots 24hr Salt-stressed shoots 3hr Salt-stressed shoots 6hr TMV all TMV infected leaves 3dpi TMV infected leaves 4dpi TMV systemic leaves 14dpi X. campestris Zeatin 1hr (1然) Zeatin 30min (1然) Zeatin 3hr (1然) Zeatin 3hr (20然) Zeatin all   Expression parameter induction factor mean from replicates single experiments >4 >2.5 >1.5 1.5 to -1.5 <-1.5 <-2.5 <-4 AND OR exclude genes regulated by smallRNA (highlighted in italics)